Package: BIOMASS 2.2.3

Dominique Lamonica

BIOMASS: Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests

Contains functions to estimate aboveground biomass/carbon and its uncertainty in tropical forests. These functions allow to (1) retrieve and to correct taxonomy, (2) estimate wood density and its uncertainty, (3) construct height-diameter models, (4) manage tree and plot coordinates, (5) estimate the aboveground biomass/carbon at the stand level with associated uncertainty. To cite 'BIOMASS', please use citation("BIOMASS"). See more in the article of Réjou-Méchain et al. (2017) <doi:10.1111/2041-210X.12753>.

Authors:Maxime Réjou-Méchain [aut, dtc], Guillaume Cornu [aut], Dominique Lamonica [aut, cre], Arthur Bailly [aut], Arthur Pere [aut], Ariane Tanguy [aut], Jerome Chave [dtc], Ted Feldpausch [dtc], Philippe Verley [ctb], Camille Piponiot [aut], Bruno Hérault [aut]

BIOMASS_2.2.3.tar.gz
BIOMASS_2.2.3.zip(r-4.5)BIOMASS_2.2.3.zip(r-4.4)BIOMASS_2.2.3.zip(r-4.3)
BIOMASS_2.2.3.tgz(r-4.5-any)BIOMASS_2.2.3.tgz(r-4.4-any)BIOMASS_2.2.3.tgz(r-4.3-any)
BIOMASS_2.2.3.tar.gz(r-4.5-noble)BIOMASS_2.2.3.tar.gz(r-4.4-noble)
BIOMASS_2.2.3.tgz(r-4.4-emscripten)BIOMASS_2.2.3.tgz(r-4.3-emscripten)
BIOMASS.pdf |BIOMASS.html✨
BIOMASS/json (API)
NEWS

# Install 'BIOMASS' in R:
install.packages('BIOMASS', repos = c('https://umr-amap.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/umr-amap/biomass/issues

Pkgdown site:https://umr-amap.github.io

Datasets:

On CRAN:

9.73 score 25 stars 1 packages 68 scripts 545 downloads 40 mentions 26 exports 45 dependencies

Last updated 10 hours agofrom:4cd4fe99fb. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 18 2025
R-4.5-winNOTEFeb 18 2025
R-4.5-macNOTEFeb 18 2025
R-4.5-linuxNOTEFeb 18 2025
R-4.4-winNOTEFeb 18 2025
R-4.4-macNOTEFeb 18 2025
R-4.3-winNOTEFeb 18 2025
R-4.3-macNOTEFeb 18 2025

Exports:AGBmonteCarloattributeTreeattributeTreeCoordbilinear_interpolationcacheManagercachePathcheck_plot_coordclearCachecomputeAGBcomputeEcomputeFeldRegioncorrectCoordGPScorrectTaxocreateCachecutPlotdivide_plotgetBioclimParamgetTaxonomygetWoodDensitylatlong2UTMmodelHDnumberCornerpredictHeightretrieveHsubplot_summarysummaryByPlot

Dependencies:classclassIntclicolorspacedata.tableDBIe1071fansifarverggplot2gluegtableisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmepillarpkgconfigproj4proxyR6rappdirsRColorBrewerRcpprlangs2scalessfterratibbleunitsutf8vctrsviridisLitewithrwk

Spatialize trees and forest stand metrics with BIOMASS

Arthur Bailly

Rendered fromVignette_spatialized_trees_and_forest_stand_metrics.Rmdusingknitr::rmarkdownon Feb 18 2025.

Last update: 2025-02-18
Started: 2025-01-31

Estimating stand biomass

Arthur Bailly

Rendered fromVignette_BIOMASS.Rmdusingknitr::rmarkdownon Feb 18 2025.

Last update: 2025-02-18
Started: 2025-01-31

Readme and manuals

Help Manual

Help pageTopics
Propagating above ground biomass (AGB) or carbon (AGC) errors to the stand levelAGBmonteCarlo
Attribute trees to subplotsattributeTree
Attribute GPS coordinates to treesattributeTreeCoord
Generalized bilinear interpolation of coordinatesbilinear_interpolation
Function that return a possibly cached file, transparently downloading it if missingcacheManager
Function used to build a file path based on a cache foldercachePath
Check coordinates of plot corners and treescheck_plot_coord
Function to clear cache content and possibly remove itclearCache
Computing tree above ground biomass (AGB)computeAGB
Retrieving Feldpausch regionscomputeFeldRegion
Correct the GPS coordinatescorrectCoordGPS
Correct trees taxonomycorrectTaxo
Function used to create or activate a permanent cache.createCache
Divides one or more plots into subplotscutPlot
Divides one ore more plots into subplotsdivide_plot
Retrieve trees taxonomygetTaxonomy
Estimating wood densitygetWoodDensity
HDmethodsHDmethods loglogFunction michaelisFunction weibullFunction
Translate the long lat coordinate in UTM coordinatelatlong2UTM
Fitting height-diameter modelsmodelHD
Nouragues plot coordinatesNouraguesCoords
Height-Diameter dataNouraguesHD
Nouragues plot 201 coordinatesNouraguesPlot201
Nouragues forest datasetNouraguesTrees
Get the UTM coordinates with the corner of the plotnumberCorner
Tree height predictionspredictHeight
Procrust analysisprocrust
Retrieving tree height from modelsretrieveH
Summarise and display tree information by subplotsubplot_summary
Summarise by plot the posterior distribution of AGB valuessummaryByPlot