Package: BIOMASS 2.1.14

Dominique Lamonica

BIOMASS: Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests

Contains functions to estimate aboveground biomass/carbon and its uncertainty in tropical forests. These functions allow to (1) retrieve and to correct taxonomy, (2) estimate wood density and its uncertainty, (3) construct height-diameter models, (4) manage tree and plot coordinates, (5) estimate the aboveground biomass/carbon at the stand level with associated uncertainty. To cite 'BIOMASS', please use citation("BIOMASS"). See more in the article of Réjou-Méchain et al. (2017) <doi:10.1111/2041-210X.12753>.

Authors:Maxime Réjou-Méchain [aut, dtc], Guillaume Cornu [aut], Dominique Lamonica [aut, cre], Arthur Pere [aut], Ariane Tanguy [aut], Camille Piponiot [aut], Jerome Chave [dtc], Bruno Hérault [aut], Ted Feldpausch [dtc], Philippe Verley [ctb], Arthur Bailly [aut]

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BIOMASS.pdf |BIOMASS.html✨
BIOMASS/json (API)
NEWS

# Install 'BIOMASS' in R:
install.packages('BIOMASS', repos = c('https://umr-amap.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/umr-amap/biomass/issues

Datasets:

On CRAN:

9.14 score 23 stars 64 scripts 843 downloads 40 mentions 25 exports 45 dependencies

Last updated 3 days agofrom:65e8d3c5e6. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winNOTENov 18 2024
R-4.5-linuxNOTENov 18 2024
R-4.4-winNOTENov 18 2024
R-4.4-macNOTENov 18 2024
R-4.3-winNOTENov 18 2024
R-4.3-macNOTENov 18 2024

Exports:AGBmonteCarloattributeTreeattributeTreeCoordbilinear_interpolationcacheManagercachePathcheck_plot_coordcheckPlotCoordcomputeAGBcomputeEcomputeFeldRegioncorrectCoordGPScorrectTaxocreateCachecutPlotdivide_plotgetBioclimParamgetTaxonomygetWoodDensitylatlong2UTMmodelHDnumberCornerpredictHeightretrieveHsummaryByPlot

Dependencies:classclassIntclicolorspacedata.tableDBIe1071fansifarverggplot2gluegtableisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmepillarpkgconfigproj4proxyR6rappdirsRColorBrewerRcpprlangs2scalessfterratibbleunitsutf8vctrsviridisLitewithrwk

Manage trees and plot coordinates with BIOMASS

Arthur Pere

Rendered fromplot.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2024-10-21
Started: 2019-01-15

Spatialized trees and forest stands metrics with BIOMASS

Arthur Bailly

Rendered fromVignette_spatialized_trees_and_forest_stands_metrics.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2024-11-18
Started: 2024-11-07

Vignette BIOMASS

Rendered fromBIOMASS.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2024-10-21
Started: 2018-12-20

Readme and manuals

Help Manual

Help pageTopics
Propagating above-ground biomass (AGB) or carbon (AGC) errors to the stand levelAGBmonteCarlo
Attribute trees to subplotsattributeTree
Attribute trees to GPS coordinatesattributeTreeCoord
Generalized bilinear interpolation of coordinatesbilinear_interpolation
Function that return a possibly cached file, transparently downloading it if missingcacheManager
Function used to build a file path based on a cache foldercachePath
Check coordinates of plot corners and treescheck_plot_coord
Check coordinates of plot corners and treescheckPlotCoord
Function to clear cache content and possibly remove itclearCache
Computing tree above-ground biomass (AGB)computeAGB
Retrieving Feldpausch regionscomputeFeldRegion
Correct the GPS coordinatescorrectCoordGPS
This function corrects typos for a given taxonomic name using the Taxonomic Name Resolution Service (TNRS).correctTaxo
Function used to create or activate a permanent cache.createCache
Divides one ore more plots into subplotscutPlot
Divides one ore more plots into subplotsdivide_plot
Retrieving the taxonomygetTaxonomy
Estimating wood densitygetWoodDensity
HDmethodsHDmethods loglogFunction michaelisFunction weibullFunction
Karnataka forest datasetKarnatakaForest
Translate the long lat coordinate in UTM coordinatelatlong2UTM
Fitting height-diameter modelsmodelHD
Height-Diameter dataNouraguesHD
Get the UTM coordinates with the corner of the plotnumberCorner
Predicting tree heightpredictHeight
Procrust analysisprocrust
Retrieving tree height from modelsretrieveH
Summarize by plot (or subplot) the posterior distribution of AGB valuessummaryByPlot