{
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  "Package": "BIOMASS",
  "Type": "Package",
  "Title": "Estimating Aboveground Biomass and Its Uncertainty in Tropical\nForests",
  "Version": "3.0",
  "Date": "2026-02-11",
  "Authors@R": "c(\nperson(\"Dominique\", \"Lamonica\", email = \"dominique.lamonica@ird.fr\", role = c(\"aut\",\"cre\")),\nperson(\"Maxime\", \"Réjou-Méchain\", email = \"maxime.rejou@gmail.com\", role = c(\"aut\", \"dtc\")),\nperson(\"Arthur\", \"Bailly\", email = \"arthur.bailly@ird.fr \", role = c(\"aut\")),\nperson(\"Guillaume\",\"Cornu\", email = \"gcornu@cirad.fr\", role = c(\"aut\"), comment = c(ORCID=\"0000-0002-7523-5176\")),\nperson(\"John\", \"Godlee\", email = \"GodleeJ@si.edu\", role = c(\"ctb\")),\nperson(\"Fabian\", \"Fischer\", email = \"f.fischer@bristol.ac.uk\", role = c(\"ctb\")),\nperson(\"Jerome\", \"Chave\", email = \"jerome.chave@univ-tlse3.fr\", role = c(\"ctb\")),\nperson(\"Arthur\", \"Pere\", role = c(\"aut\")),\nperson(\"Ariane\", \"Tanguy\", role = c(\"aut\")),\nperson(\"Camille\", \"Piponiot\", role = c(\"aut\")),\nperson(\"Bruno\", \"Hérault\", email = \"bruno.herault@cirad.fr\", role = c(\"aut\")),\nperson(\"Philippe\", \"Verley\", email = \"philippe.verley@ird.fr \", role = c(\"ctb\")),\nperson(\"Ted\", \"Feldpausch\", email = \"T.R.Feldpausch@exeter.ac.uk\", role = c(\"dtc\"))\n)",
  "Description": "Contains functions for estimating above-ground\nbiomass/carbon and its uncertainty in tropical forests. These\nfunctions allow to (1) retrieve and correct taxonomy, (2)\nestimate wood density and its uncertainty, (3) build\nheight-diameter models, (4) manage tree and plot coordinates,\n(5) estimate above-ground biomass/carbon at stand level with\nassociated uncertainty. To cite ‘BIOMASS’, please use\ncitation(‘BIOMASS’). For more information, see Réjou-Méchain et\nal. (2017) <doi:10.1111/2041-210X.12753>.",
  "License": "GPL-2",
  "Encoding": "UTF-8",
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  "Roxygen": "list(markdown = TRUE)",
  "URL": "https://umr-amap.github.io/BIOMASS/,\nhttps://github.com/umr-amap/BIOMASS/",
  "BugReports": "https://github.com/umr-amap/BIOMASS/issues/",
  "VignetteBuilder": "knitr",
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  "Repository": "https://umr-amap.r-universe.dev",
  "Date/Publication": "2026-05-28 11:53:38 UTC",
  "RemoteUrl": "https://github.com/umr-amap/biomass",
  "RemoteRef": "HEAD",
  "RemoteSha": "8617ac1ce42da696aed12380baf2c7b859d661d7",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-28 14:40:57 UTC",
    "User": "root"
  },
  "Author": "Dominique Lamonica [aut, cre],\nMaxime Réjou-Méchain [aut, dtc],\nArthur Bailly [aut],\nGuillaume Cornu [aut] (ORCID: <https://orcid.org/0000-0002-7523-5176>),\nJohn Godlee [ctb],\nFabian Fischer [ctb],\nJerome Chave [ctb],\nArthur Pere [aut],\nAriane Tanguy [aut],\nCamille Piponiot [aut],\nBruno Hérault [aut],\nPhilippe Verley [ctb],\nTed Feldpausch [dtc]",
  "Maintainer": "Dominique Lamonica <dominique.lamonica@ird.fr>",
  "MD5sum": "3a69a41dee6cd037a96ef0490f0961b6",
  "_user": "umr-amap",
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  "_created": "2026-05-28T14:40:57.000Z",
  "_published": "2026-05-28T15:01:20.937Z",
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  "_homeurl": "https://github.com/umr-amap/biomass",
  "_realowner": "umr-amap",
  "_cranurl": true,
  "_releases": [
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      "date": "2016-09-21"
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      "date": "2017-01-05"
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      "version": "1.2",
      "date": "2018-02-21"
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  "_exports": [
    "AGBmonteCarlo",
    "attributeTree",
    "attributeTreeCoord",
    "bilinear_interpolation",
    "cacheManager",
    "cachePath",
    "calibrate_model",
    "check_plot_coord",
    "clearCache",
    "computeAGB",
    "computeE",
    "computeFeldRegion",
    "correctCoordGPS",
    "correctTaxo",
    "createCache",
    "cutPlot",
    "divide_plot",
    "getBioclimParam",
    "getWoodDensity",
    "latlong2UTM",
    "modelHD",
    "numberCorner",
    "predict_map",
    "predictHeight",
    "retrieveH",
    "subPattern",
    "subplot_summary",
    "summaryByPlot"
  ],
  "_datasets": [
    {
      "name": "feldCoef",
      "title": "Feldpausch et al. 2012 coefficients for generalized height-diameter models",
      "object": "feldCoef",
      "class": [
        "data.frame"
      ],
      "fields": [
        "a",
        "b",
        "c",
        "RSE"
      ],
      "rows": 12,
      "table": true,
      "tojson": true
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    {
      "name": "NouraguesCoords",
      "title": "Nouragues plot coordinates",
      "object": "NouraguesCoords",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Site",
        "Plot",
        "Xfield",
        "Yfield",
        "Xutm",
        "Yutm",
        "Long",
        "Lat"
      ],
      "rows": 16,
      "table": true,
      "tojson": true
    },
    {
      "name": "NouraguesHD",
      "title": "Height-Diameter data",
      "object": "NouraguesHD",
      "class": [
        "data.frame"
      ],
      "fields": [
        "plotId",
        "genus",
        "species",
        "D",
        "H",
        "lat",
        "long"
      ],
      "rows": 1051,
      "table": true,
      "tojson": true
    },
    {
      "name": "NouraguesPlot201",
      "title": "Nouragues plot 201 coordinates",
      "object": "NouraguesPlot201",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Site",
        "Plot",
        "Xfield",
        "Yfield",
        "Xutm",
        "Yutm",
        "Long",
        "Lat"
      ],
      "rows": 40,
      "table": true,
      "tojson": true
    },
    {
      "name": "NouraguesTrees",
      "title": "Nouragues forest dataset",
      "object": "NouraguesTrees",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Site",
        "Plot",
        "Xfield",
        "Yfield",
        "Family",
        "Genus",
        "Species",
        "D"
      ],
      "rows": 2050,
      "table": true,
      "tojson": true
    },
    {
      "name": "param_4",
      "title": "Posterior distribution of Chave et al.'s 2014 equation 4 parameters",
      "object": "param_4",
      "class": [
        "data.frame"
      ],
      "fields": [
        "intercept",
        "logagbt",
        "sd"
      ],
      "rows": 1001,
      "table": true,
      "tojson": true
    },
    {
      "name": "param_7",
      "title": "Posterior distribution of parameters associated with the equation 7 by Chave et al. 2014.",
      "object": "param_7",
      "class": [
        "data.frame"
      ],
      "fields": [
        "intercept",
        "logwsg",
        "logdbh",
        "logdbh2",
        "E",
        "sd",
        "temp",
        "cwd",
        "prec"
      ],
      "rows": 1001,
      "table": true,
      "tojson": true
    },
    {
      "name": "wsg_estimates",
      "title": "The global wood density database",
      "object": "wsg_estimates",
      "class": [
        "data.frame"
      ],
      "fields": [
        "family",
        "genus",
        "species",
        "wsg",
        "sd",
        "level_tax"
      ],
      "rows": 20332,
      "table": true,
      "tojson": true
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  "_help": [
    {
      "page": "AGBmonteCarlo",
      "title": "Propagating above ground biomass (AGB) or carbon (AGC) errors to the stand level",
      "topics": [
        "AGBmonteCarlo"
      ]
    },
    {
      "page": "attributeTree",
      "title": "Attribute trees to subplots",
      "topics": [
        "attributeTree"
      ]
    },
    {
      "page": "attributeTreeCoord",
      "title": "Attribute GPS coordinates to trees",
      "topics": [
        "attributeTreeCoord"
      ]
    },
    {
      "page": "bilinear_interpolation",
      "title": "Generalized bilinear interpolation of coordinates",
      "topics": [
        "bilinear_interpolation"
      ]
    },
    {
      "page": "cacheManager",
      "title": "Function that return a possibly cached file, transparently downloading it if missing",
      "topics": [
        "cacheManager"
      ]
    },
    {
      "page": "cachePath",
      "title": "Function used to build a file path based on a cache folder",
      "topics": [
        "cachePath"
      ]
    },
    {
      "page": "calibrate_model",
      "title": "Calibrate a bayesian model to fit log(AGBD) ~ log(raster metric)",
      "topics": [
        "calibrate_model"
      ]
    },
    {
      "page": "check_plot_coord",
      "title": "Check coordinates of plot corners and trees",
      "topics": [
        "check_plot_coord"
      ]
    },
    {
      "page": "clearCache",
      "title": "Function to clear cache content and possibly remove it",
      "topics": [
        "clearCache"
      ]
    },
    {
      "page": "computeAGB",
      "title": "Computing tree above ground biomass (AGB)",
      "topics": [
        "computeAGB"
      ]
    },
    {
      "page": "computeFeldRegion",
      "title": "Retrieving Feldpausch regions",
      "topics": [
        "computeFeldRegion"
      ]
    },
    {
      "page": "correctCoordGPS",
      "title": "Correct the GPS coordinates",
      "topics": [
        "correctCoordGPS"
      ]
    },
    {
      "page": "correctTaxo",
      "title": "Correct and match taxonomic names to the World Flora Online database",
      "topics": [
        "correctTaxo"
      ]
    },
    {
      "page": "createCache",
      "title": "Function used to create or activate a permanent cache.",
      "topics": [
        "createCache"
      ]
    },
    {
      "page": "cutPlot",
      "title": "Divides one or more plots into subplots",
      "topics": [
        "cutPlot"
      ]
    },
    {
      "page": "divide_plot",
      "title": "Divides one ore more plots into subplots",
      "topics": [
        "divide_plot"
      ]
    },
    {
      "page": "getWoodDensity",
      "title": "Estimating wood density and associated uncertainties",
      "topics": [
        "getWoodDensity"
      ]
    },
    {
      "page": "HDmethods",
      "title": "HDmethods",
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