System requirements | AMAPVox R package | AMAPVox GUI
Package: AMAPVox 2.4.2
Philippe Verley
AMAPVox: LiDAR Data Voxelisation
Read, manipulate and write voxel spaces. Voxel spaces are read from text-based output files of the 'AMAPVox' software. 'AMAPVox' is a LiDAR point cloud voxelisation software that aims at estimating leaf area through several theoretical/numerical approaches. See more in the article Vincent et al. (2017) <doi:10.23708/1AJNMP> and the technical note Vincent et al. (2021) <doi:10.23708/1AJNMP>.
Authors:
AMAPVox_2.4.2.tar.gz
AMAPVox_2.4.2.zip(r-4.7)AMAPVox_2.4.2.zip(r-4.6)AMAPVox_2.4.2.zip(r-4.5)
AMAPVox_2.4.2.tgz(r-4.6-any)AMAPVox_2.4.2.tgz(r-4.5-any)
AMAPVox_2.4.2.tar.gz(r-4.7-any)AMAPVox_2.4.2.tar.gz(r-4.6-any)
AMAPVox_2.4.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
AMAPVox/json (API)
| # Install 'AMAPVox' in R: |
| install.packages('AMAPVox', repos = c('https://umr-amap.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/umr-amap/amapvox/issues
Last updated from:95b7d2e96d. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 153 | ||
| source / vignettes | OK | 209 | ||
| linux-release-x86_64 | OK | 156 | ||
| macos-release-arm64 | OK | 125 | ||
| macos-oldrel-arm64 | OK | 93 | ||
| windows-devel | OK | 103 | ||
| windows-release | OK | 103 | ||
| windows-oldrel | OK | 115 | ||
| wasm-release | OK | 117 |
Exports:aboveCanopyaboveGroundbelowCanopybelowGroundbutterflycanopycanopyHeightclearcomputeGcropfillNAgetLocalVersionsgetMaxCornergetMinCornergetParametergetPositiongetRemoteVersionsgetVoxelSizegroundgroundElevationgroundEnergyguiinstallVersionis.VoxelSpacencolnrowplantAreaDensityplantAreaIndexplotplotGreadVoxelSpaceremoveVersionrunshowtoRasterwriteVoxelSpace
Dependencies:clicurldata.tabledplyrgenericsgluejsonlitelifecyclemagrittrpillarpkgconfigR6rappdirsrlangstringistringrtibbletidyselectutf8vctrswithr
Installation
Last update: 2026-02-16
Started: 2021-09-30
Voxelization
Semantics | LiDAR scans | LAS/LAZ point cloud | Text SHOT format | RIEGL scans | LEICA formats | FARO formats | Trajectory file (LAS/LAZ) | Digital Terrain Model input | Output parameters | Transformation matrix | SOP matrix | POP matrix | VOP matrix | Voxel space | Filtering | Digital Terrain Model filter | Shot decimation | Shot angle filter | False empty shot | Point cloud filter | Echo attribute filter | Classification filter | Weighting | Scanner
Last update: 2026-02-16
Started: 2021-09-30
Publications
Last update: 2023-06-01
Started: 2022-04-13
AMAPVox
Installation | Graphical User Interface | Voxelization
Last update: 2022-04-15
Started: 2021-09-30
Graphical User Interface
Main frame | Tabs Configuration files and Output files | Log pane | Vox tools tab pane | New configuration | Open configuration | Edit configuration | Save configuration | Save as configuration | Close configuration | Run configuration | Visualization pane | 3D viewer | Vertical profile
Last update: 2022-03-24
Started: 2021-09-03
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| AMAPVox package | AMAPVox-package AMAPVox |
| Identify butterflies from a VoxelSpace object. | butterfly |
| Extract canopy from voxel space. | aboveCanopy belowCanopy canopy canopyHeight |
| Clear voxel | clear clear,VoxelSpace,data.table-method clear,VoxelSpace,matrix-method clear,VoxelSpace,vector-method |
| Foliage projection ratio G(theta). | computeG |
| Crop voxel space | crop |
| Extract or Replace Parts of a VoxelSpace Object | $,VoxelSpace-method $<-,VoxelSpace-method Extract [[,VoxelSpace,ANY,missing-method [[<-,VoxelSpace,ANY,missing-method |
| Fill missing values (NA) with averaged neighboring data | fillNA |
| List local AMAPVox versions. | getLocalVersions |
| Gets the x, y, z coordinates of the voxel space top right corner. | getMaxCorner getMaxCorner,VoxelSpace-method |
| Gets the x, y, z coordinates of the voxel space bottom left corner. | getMinCorner getMinCorner,VoxelSpace-method |
| Gets a parameter from the VoxelSpace header. | getParameter getParameter,VoxelSpace,character-method getParameter,VoxelSpace,missing-method |
| Gets the x, y, z coordinates of a given voxel. | getPosition getPosition,VoxelSpace,data.table-method getPosition,VoxelSpace,matrix-method getPosition,VoxelSpace,missing-method getPosition,VoxelSpace,vector-method |
| List remote AMAPVox versions. | getRemoteVersions |
| Gets the elemental size of a voxel (dx, dy, dz) in meter. | getVoxelSize getVoxelSize,VoxelSpace-method |
| Extract ground from voxel space. | aboveGround belowGround ground groundElevation groundEnergy |
| Install specific AMAPVox version on local computer. | installVersion |
| Merge two voxel spaces | merge.VoxelSpace |
| Plant Area Density (PAD) | plantAreaDensity |
| Plant Area Index (PAI) | plantAreaIndex |
| Plot an object of class VoxelSpace | plot plot,VoxelSpace,data.table-method plot,VoxelSpace,missing-method |
| Plot G(theta) profiles for one or several leaf angle distribution functions | plotG |
| Read a voxel file | readVoxelSpace |
| Remove specific AMAPVox version from local computer. | removeVersion |
| Run AMAPVox | gui run |
| Tools inherited from base R for VoxelSpace object. | dim.VoxelSpace is.VoxelSpace length.VoxelSpace names.VoxelSpace ncol,VoxelSpace-method nrow,VoxelSpace-method print.VoxelSpace show,VoxelSpace-method tools |
| Voxel layer to raster | toRaster |
| VoxelSpace | VoxelSpace-class |
| Write a voxel file | writeVoxelSpace |
