Package: AMAPVox 2.3.3

Philippe Verley

AMAPVox: LiDAR Data Voxelisation

Read, manipulate and write voxel spaces. Voxel spaces are read from text-based output files of the 'AMAPVox' software. 'AMAPVox' is a LiDAR point cloud voxelisation software that aims at estimating leaf area through several theoretical/numerical approaches. See more in the article Vincent et al. (2017) <doi:10.23708/1AJNMP> and the technical note Vincent et al. (2021) <doi:10.23708/1AJNMP>.

Authors:Grégoire Vincent [aut], Julien Heurtebize [aut], Philippe Verley [aut, cre]

AMAPVox_2.3.3.tar.gz
AMAPVox_2.3.3.zip(r-4.5)AMAPVox_2.3.3.zip(r-4.4)AMAPVox_2.3.3.zip(r-4.3)
AMAPVox_2.3.3.tgz(r-4.5-any)AMAPVox_2.3.3.tgz(r-4.4-any)AMAPVox_2.3.3.tgz(r-4.3-any)
AMAPVox_2.3.3.tar.gz(r-4.5-noble)AMAPVox_2.3.3.tar.gz(r-4.4-noble)
AMAPVox_2.3.3.tgz(r-4.4-emscripten)AMAPVox_2.3.3.tgz(r-4.3-emscripten)
AMAPVox.pdf |AMAPVox.html✨
AMAPVox/json (API)
NEWS

# Install 'AMAPVox' in R:
install.packages('AMAPVox', repos = c('https://umr-amap.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/umr-amap/amapvox/issues

Pkgdown site:https://amapvox.org

On CRAN:

Conda:

6.13 score 15 stars 12 scripts 527 downloads 36 exports 22 dependencies

Last updated 2 months agofrom:3c0ba1e71a. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 22 2025
R-4.5-winOKMar 22 2025
R-4.5-macOKMar 22 2025
R-4.5-linuxOKMar 22 2025
R-4.4-winOKMar 22 2025
R-4.4-macOKMar 22 2025
R-4.4-linuxOKMar 22 2025
R-4.3-winOKMar 22 2025
R-4.3-macOKMar 22 2025

Exports:aboveCanopyaboveGroundbelowCanopybelowGroundbutterflycanopycanopyHeightclearcomputeGcropfillNAgetLocalVersionsgetMaxCornergetMinCornergetParametergetPositiongetRemoteVersionsgetVoxelSizegroundgroundElevationgroundEnergyguiinstallVersionis.VoxelSpacencolnrowplantAreaDensityplantAreaIndexplotplotGreadVoxelSpaceremoveVersionrunshowtoRasterwriteVoxelSpace

Dependencies:clicurldata.tabledplyrfansigenericsgluejsonlitelifecyclemagrittrpillarpkgconfigR6rappdirsrlangstringistringrtibbletidyselectutf8vctrswithr

AMAPVox

Rendered fromAMAPVox.Rmdusingknitr::rmarkdownon Mar 22 2025.

Last update: 2022-04-15
Started: 2021-09-30

Graphical User Interface

Rendered fromamapvox-gui.Rmdusingknitr::rmarkdownon Mar 22 2025.

Last update: 2022-03-24
Started: 2021-09-03

Installation

Rendered fromInstallation.Rmdusingknitr::rmarkdownon Mar 22 2025.

Last update: 2023-02-24
Started: 2021-09-30

Publications

Rendered fromPublications.Rmdusingknitr::rmarkdownon Mar 22 2025.

Last update: 2023-06-01
Started: 2022-04-13

Voxelization

Rendered fromVoxelization.Rmdusingknitr::rmarkdownon Mar 22 2025.

Last update: 2023-02-24
Started: 2021-09-30

Readme and manuals

Help Manual

Help pageTopics
AMAPVox packageAMAPVox-package AMAPVox
Identify butterflies from a VoxelSpace object.butterfly
Extract canopy from voxel space.aboveCanopy belowCanopy canopy canopyHeight
Clear voxelclear clear,VoxelSpace,data.table-method clear,VoxelSpace,matrix-method clear,VoxelSpace,vector-method
Foliage projection ratio G(theta).computeG
Crop voxel spacecrop
Extract or Replace Parts of a VoxelSpace Object$,VoxelSpace-method $<-,VoxelSpace-method Extract [[,VoxelSpace,ANY,missing-method [[<-,VoxelSpace,ANY,missing-method
Fill missing values (NA) with averaged neighboring datafillNA
List local AMAPVox versions.getLocalVersions
Gets the x, y, z coordinates of the voxel space top right corner.getMaxCorner getMaxCorner,VoxelSpace-method
Gets the x, y, z coordinates of the voxel space bottom left corner.getMinCorner getMinCorner,VoxelSpace-method
Gets a parameter from the VoxelSpace header.getParameter getParameter,VoxelSpace,character-method getParameter,VoxelSpace,missing-method
Gets the x, y, z coordinates of a given voxel.getPosition getPosition,VoxelSpace,data.table-method getPosition,VoxelSpace,matrix-method getPosition,VoxelSpace,missing-method getPosition,VoxelSpace,vector-method
List remote AMAPVox versions.getRemoteVersions
Gets the elemental size of a voxel (dx, dy, dz) in meter.getVoxelSize getVoxelSize,VoxelSpace-method
Extract ground from voxel space.aboveGround belowGround ground groundElevation groundEnergy
Install specific AMAPVox version on local computer.installVersion
Merge two voxel spacesmerge.VoxelSpace
Plant Area Density (PAD)plantAreaDensity
Plant Area Index (PAI)plantAreaIndex
Plot an object of class VoxelSpaceplot plot,VoxelSpace,data.table-method plot,VoxelSpace,missing-method
Plot G(theta) profiles for one or several leaf angle distribution functionsplotG
Read a voxel filereadVoxelSpace
Remove specific AMAPVox version from local computer.removeVersion
Run AMAPVoxgui run
Tools inherited from base R for VoxelSpace object.dim.VoxelSpace is.VoxelSpace length.VoxelSpace names.VoxelSpace ncol,VoxelSpace-method nrow,VoxelSpace-method print.VoxelSpace show,VoxelSpace-method tools
Voxel layer to rastertoRaster
VoxelSpaceVoxelSpace-class
Write a voxel filewriteVoxelSpace